chr3:52218953:T>C Detail (hg38)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr3:52,252,969-52,252,969 View the variant detail on this assembly version. |
hg38 | chr3:52,218,953-52,218,953 |
HGVS
[No Data.]
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.508 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
Both rs187084 and rs352162 were significantly associated with TNF-α production by peripheral blood l... | DisGeNET | Detail |
Both rs187084 and rs352162 were significantly associated with TNF-α production by peripheral blood l... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs352162 dbSNP
- Genome
- hg38
- Position
- chr3:52,218,953-52,218,953
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs352162
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.5076
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 8508
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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